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MTB - PCDB Statistics
 

Table 1: Different strains of Mycobacterium tuberculosis having complete sequenced genome

MTB Strain Genome Size No. of Genes No. of Proteins
Mycobacterium tuberculosis H37Rv (MTB_H37Rv) 4.41 Mbp 4047 3988
Mycobacterium tuberculosis H37Ra (MTB_H37Ra) 4.40 Mbp 4084 4034
Mycobacterium tuberculosis CDC1551 (MTB_CDC1551) 4.41 Mbp 4293 4189
Mycobacterium tuberculosis F11 (MTB_F11) 4.42 Mbp 3998 3941
Mycobacterium tuberculosis KZN1435 (MTB_KZN1435) 4.30 Mbp 4107 4059
 
Table 2: Comparison Result by taking 2 strains at a time

MTB-Strains

Identities = 100%
(Q_coverage=
100%)

Identities= 100% (Q_coverage
<100)

Identities
>=95% and <100%

Identities
>=90% and <95%

Identities
>=70%and <90%

Identities
>=50%and <70%

Identities
<50%

MTB_H37Rv-MTB_H37Ra

3810

20

113

1

5

9

26

MTB_H37Rv-MTB_CDC1551

2761

167

847

7

24

42

136

MTB_H37Rv-MTB_F11

3222

70

563

5

16

21

85

MTB_H37Rv-MTB_KZN1435

3193

62

650

4

17

10

45

MTB_H37Ra-MTB_CDC1551

2825

173

844

6

25

40

121

MTB_H37Ra-MTB_F11

3233

81

545

7

19

22

123

MTB_H37Ra-MTB_KZN1435

3230

73

626

5

19

13

64

MTB_CDC1551-MTB_F11

2673

295

765

10

38

58

303

MTB_CDC1551-MTB_KZN1435

2750

251

819

7

37

50

232

MTB_F11-MTB_KZN1435

3425

66

416

5

5

6

16

 
Table 3: Comparison Result by taking 3 strains at a time

MTB-Strains

Identities = 100%
(Q_coverage=
100%)

Identities = 100% (Q_coverage
<100)

Identities
>=95% and <100%

Identities >=90%and <95%

Identities >=70%and <90%

Identities >=50%and <70%

Identities <50%

MTB_H37Rv-MTB_H37Ra- MTB_CDC1551

2735

4

77

0

1

5

19

MTB_H37Rv-MTB_H37Ra- MTB_F11

3173

8

78

0

1

5

11

MTB_H37Rv-MTB_H37Ra- MTB_KZN1435

3143

8

82

0

1

2

10

MTB_H37Ra- MTB_CDC1551- MTB_F11

2558

41

355

2

6

9

24

MTB_H37Ra- MTB_CDC1551- MTB_KZN1435

2559

29

393

2

5

6

19

MTB_CDC1551- MTB_F11- MTB_KZN1435

2491

208

622

6

32

45

219

MTB_H37Rv-MTB_F11- MTB_KZN1435

2993

31

437

4

12

6

36

MTB_H37Rv-MTB_CDC1551- MTB_F11

2531

36

369

2

4

12

30

MTB_H37Rv-MTB_CDC1551- MTB_KZN1435

2515

24

413

2

3

6

25

MTB_H37Ra-MTB_F11- MTB_KZN1435

3006

36

413

4

13

10

54

 
Table 4: Comparison Result by taking 4 strains at a time

MTB Strains

Identities= 100%
(Q_coverage=
100%)

Identities= 100% Identity (Q_coverage
<100)

Identities >=95%and<100%

Identities >=90%and <95%

Identities >=70%and <90%

Identities >=50%and <70%

Identities <50%

MTB_H37Rv-MTB_H37Ra- MTB_CDC1551- MTB_F11

2515

4

62

0

0

4

9

MTB_H37Rv-MTB_H37Ra- MTB_CDC1551- MTB_KZN1435

2498

4

68

0

0

1

10

MTB_H37Ra- MTB_CDC1551- MTB_F11- MTB_KZN1435

2411

23

327

2

3

5

15

MTB_H37Rv-
MTB_H37Ra-           
MTB_F11-
MTB_KZN1435

2954

7

75

0

1

2

8

MTB_H37Rv-
MTB_CDC1551-       
MTB_F11-
MTB_KZN1435

2387

19

347

2

2

4

19

 
Table 5: Comparison Result by taking 5 strains at a time

MTB Strains

Identities = 100% Identity
(Q_coverage=
100%)

Identities= 100% Identity (Q_coverage
<100)

Identities
>=95% and <100%

Identities >=90%and <95%

Identities >=70%and <90%

Identities >=50%and <70%

Identities <50%

MTB_H37Rv-MTB_H37Ra- MTB_CDC1551- MTB_F11- MTB_KZN1435

2373

4

62

0

0

1

8

 
Table 6: No. of repeated (Duplicate) proteins present in Different Strains

Mycobacterium tuberculosis H37Ra (MTB_H37Ra)

Sl.

No. of repeats

Locus tag

1

16

MRA_0011, MRA_3515, MRA_3420, MRA_3368, MRA_3219, MRA_2838, MRA_2504, MRA_2379, MRA_2298, MRA_2182, MRA_2121, MRA_1778, MRA_1769, MRA_1767, MRA_1379, MRA_0806

2

17

MRA_0012, MRA_3514, MRA_3421, MRA_3367, MRA_3218, MRA_2839, MRA_2677, MRA_2505, MRA_2378, MRA_2297, MRA_2183, MRA_2120, MRA_1777, MRA_1770, MRA_1768, MRA_1380, MRA_0805

3

2

MRA_0098, MRA_3507

4

2

MRA_0824, MRA_3150

5

2

MRA_0825, MRA_3149

6

2

MRA_1045, MRA_3655

7

2

MRA_1050, MRA_1160

8

2

MRA_1051, MRA_1159

9

3

MRA_1056, MRA_3147, MRA_3054

10

2

MRA_1208, MRA_2538

11

2

MRA_1321, MRA_3838

12

2

MRA_2373, MRA_2376

13

2

MRA_3388, MRA_3884

 

Mycobacterium tuberculosis H37Rv (MTB_H37Rv)

Sl.

No. of repeats

Locus tag

1

2

Rv0094c, Rv3467

2

16

Rv0795, Rv3474, Rv3381c, Rv3325, Rv3186, Rv3184, Rv2815c, Rv2648, Rv2480c, Rv2354, Rv2278, Rv2168c, Rv2105, Rv1763, Rv1757c, Rv1370c    

3

12

Rv0796, Rv3475, Rv2479c, Rv2167c, Rv2649, Rv3326, Rv3187, Rv3185, Rv2814c, Rv2355, Rv2279, Rv2106

4

2

Rv0814c, Rv3118

5

2

Rv0815c, Rv3117

6

2

Rv1037c, Rv3619c

7

2

Rv1042c, Rv1149

8

3

Rv1047, Rv3115, Rv3023c

9

2

Rv1199c, Rv2512c

10

2

Rv1313c, Rv3798

11

4

Rv1369c, Rv3380c, Rv1764, Rv1756c

12

2

Rv3348, Rv3844

 

Mycobacterium tuberculosis CDC1551 (MTB_CDC1551)

Sl.

No. of repeats

Locus tag

1

3

MT0413, MT3100, MT1803

2

4

MT0414, MT3099, MT2882, MT1804

3

2

MT0836, MT3200

4

2

MT0837, MT3199

5

4

MT1076, MT3197, MT3107, MT1237

6

2

MT1235, MT2412

7

2

MT1814, MT2071

8

2

MT3455, MT3955

 

Mycobacterium tuberculosis F11 (MTB_F11)

Sl.

No. of repeats

Locus tag

1

2

TBFG_10829, TBFG_13138

2

 

TBFG_10830, TBFG_13137

3

16

TBFG_10852, TBFG_13357, TBFG_13206, TBFG_13132, TBFG_12828, TBFG_12416, TBFG_12381, TBFG_12378, TBFG_12114, TBFG_12048, TBFG_11806, TBFG_11792, TBFG_11785, TBFG_11780, TBFG_11773, TBFG_11739

4

17

TBFG_10853, TBFG_13358, TBFG_13207, TBFG_13131, TBFG_12829, TBFG_12417, TBFG_12380, TBFG_12377, TBFG_12113, TBFG_12049, TBFG_11807, TBFG_11791, TBFG_11784, TBFG_11781, TBFG_11774, TBFG_11740, TBFG_11347

5

3

TBFG_11065, TBFG_13039, TBFG_12534

6

2

TBFG_11223, TBFG_13135

7

2

TBFG_12205, TBFG_12452

8

2

TBFG_13383, TBFG_1388

 

Mycobacterium tuberculosis KZN1435 (MTB_KZN1435)

Sl.

No. of repeats

Locus tag

1

2

TBMG_00828, TBMG_03162

2

2

TBMG_00829, TBMG_03161

3

14

TBMG_00851, TBMG_03676, TBMG_03375, TBMG_03156, TBMG_02240, TBMG_02191, TBMG_01965, TBMG_04044, TBMG_04042, TBMG_01701, TBMG_01625, TBMG_01479, TBMG_01199, TBMG_01159

4

14

TBMG_00852, TBMG_03677, TBMG_03376, TBMG_03155, TBMG_02239, TBMG_02190, TBMG_01966, TBMG_04043, TBMG_01874, TBMG_01700, TBMG_01624, TBMG_01480, TBMG_01200, TBMG_01158

5

4

TBMG_00946, TBMG_03159, TBMG_02941, TBMG_01459

6

2

TBMG_01621, TBMG_01626

7

2

TBMG_01805, TBMG_01550

8

2

TBMG_01970, TBMG_02231

9

6

TBMG_04053, TBMG_03657, TBMG_02949, TBMG_02785, TBMG_01622, TBMG_01631

10

4

TBMG_02204, TBMG_02949, TBMG_02785, TBMG_03657

11

2

TBMG_02667, TBMG_03845

12

2

TBMG_03398, TBMG_03892

 

 
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Bioinformatics Centre
Jamnalal Bajaj Tropical Disease Research Centre
Mahatma Gandhi Institute of Medical Sciences, Sevagram - 442 102
 
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